Projects | Research | Experience | Contact

About me

Associate Professor in Computer Science @ Université de Haute Alsace.
Researcher @ IRIMAS in the MSD team.
Lecturer @ ENSISA in the Computer Science & Networking department.

Personal Projects

You can find all my projects on my github profiles Cyril-Meyer and Yt-trium (old account). Here is a summary of the most interesting.

↳ Data analysis / Data visualization

• data.cyrilmeyer.eu
  Blog with data analysis, data visualization, dataset aggregation, based on open data / public datasets.
• VREMS
  Volume Rendering toolkit for Electron Microscopy Segmentations.
• Alad0
  A minimalist Python/WebGL system for viewing FITS images (preview).

↳ Machine learning / Deep Learning / related Python library & toolkit

• NeNISt
  Neural Networks (Deep Learning) based Image Segmentation toolkit for Electron Microscopy.
• lii
  Large Image Inference.
• tism
  TensorFlow Image Segmentation Models.
• isisim
  Interactive Segmentation Interaction SIMulation : simulate user interaction for interactive segmentation algorithms.
• NumPyDraw
  Draw 2D and 3D shapes into NumPy array.
• SegmentationToScribble
  Convert segmentation binary mask into scribble binary mask (isisim prequel).
• DeepSeg3D (2018)
  Neural network toolkit for 3D image segmentation, check the wiki for more information.
  • nii-pooling
    Simple script to resize nifti images.
  • Chainsaw
    Graph/Tree-like Image Generator.

↳ Image Processing (no machine or deep learning)

• Cyril-Meyer/LibTIM
  Fork of bnaegel/LibTIM, image processing library.
• PyLibTIM
  Python library that binds some features of LibTIM.
• MaMPy
  Mathematical Morphology Python Library.
• ISVaC
  Image Sensor Vacuum Cleaner, a one night project aiming to remove dirt on images.

↳ Electronics / Embedded System

• Stendarr
  Raspberry Pi + ESP32-CAM = Open Source Video Surveillance System.
• Housecarl
  ESP32-CAM open source security camera.
• Chronos
  Arduino Chess Clock with multiple game modes.

↳ Miscellaneous

• ArtOfRallyTK
  Toolkit for Art Of Rally.
• VirtualBrush
  Create virtual brush stroke with bristle simulation.
• PyBattery
  Laptop Battery Logger.
• Couscous-raytracer
  Another raytracing rendering engine.
• PotatoC
  A StenC (Simplified-C) Compiler for MIPS R2000.

Contributions to Open Source community projects

• aeon
  A toolkit for machine learning from time series.
• Higra and Higra-Notebooks
  Hierarchical Graph Analysis library for efficient sparse graph analysis.
• sktime
  A unified framework for machine learning with time series.
• OpenMW
  Open source Elderscrolls 3: Morrowind engine reimplementation.

Website subdomains

• data.cyrilmeyer.eu
• recettes.cyrilmeyer.eu
• trucs.cyrilmeyer.eu

Research

Publications

• Cyril Meyer, Ali Ismail-Fawaz, Maxime Devanne, Jonathan Weber, Germain Forestier : A Deep Dive into Alternatives to the Global Average Pooling for Time Series Classification. AALTD ECML/PKDD 2025.
  📄 📽️ 🖥️
• Javidan Abdullayev, Maxime Devanne, Cyril Meyer, Ali Ismail-Fawaz, Jonathan Weber, Germain Forestier : Enhancing Time Series Classification with Diversity-Driven Neural Network Ensembles. IJCNN 2025.
  📄
• Cyril Meyer, Victor Hanss, Etienne Baudrier, Benoît Naegel, Patrick Schultz : DeepSCEM: A User-Friendly Solution for Deep Learning-Based Image Segmentation in Cellular Electron Microscopy. Biology of the Cell 2025. Published 10.1111/boc.70032.
  📄 🖥️
• Cyril Meyer : Segmentation d’images de microscopie électronique par apprentissage profond pour l’analyse quantitative de l’ultrastructure cellulaire. PhD manuscript, defended 17/11/2023 📄 theses.fr/2023STRAD045.
• Cyril Meyer, Etienne Baudrier, Patrick Schultz, Benoît Naegel : Combining max-tree and CNN for segmentation of cellular FIB-SEM images. RRPR DGMM 2022. Published 10.1007/978-3-031-40773-4_7.
  📄 ICube:4-MBSN22 🖼️
• Cyril Meyer, Veronique Mallouh, Daniele Spehner, Etienne Baudrier, Patrick Schultz, Benoît Naegel : Automatic Multi Class Organelle Segmentation for Cellular FIB-SEM Images. ISBI 2021. Published 10.1109/ISBI48211.2021.9434075.
  📄 ICube:4-MMSB21 🖼️ 🖥️
• Dominique Badariotti, Cyril Meyer et Yasmina Ramarani : MoGUS, un outil de modélisation et d’analyse comparative des trames urbaines. Rev. Int. Geomat. Volume 30, Numéro 3-4. Published 10.3166/rig.2021.00109 .
  📄
• Pedro Sanches, Cyril Meyer, Vincent Vigon, Benoît Naegel : Cerebrovascular Network Segmentation on MRA Images with Deep Learning. ISBI 2019. Published 10.1109/ISBI.2019.8759569.
  📄 ICube:4-SMVN19 & arXiv:1812.01752

Professional Experience

• Sep 2024 - now : Associate professor ENSISA, IRIMAS, UHA, team MSD.
• Oct 2023 - Aug 2024 : ATER IUT Robert Schuman, ICube (UMR 7357), team IMAGeS.
• Oct 2022 - Sep 2023 : PhD Student & ATER IUT Robert Schuman, ICube (UMR 7357), team IMAGeS and IGBMC (UMR 7104).
• Oct 2019 - Sep 2022 : PhD Student at ICube (UMR 7357), team IMAGeS and IGBMC (UMR 7104).
  Deep learning image segmentation in electron microscopy for quantitative analysis of cellular ultrastructure.
• Sep 2018 - Sep 2019 : Research Engineer (co-op) at LIVE Laboratory (UMR 7362).
  REMUS and MoGUS project : urban model generation, analysis and simulation.
• May 2018 - Aug 2018 : Internship at ICube (UMR 7357), team IMAGeS.
  Cerebrovascular Network Segmentation on MRA Images with Deep Learning.
• June 2017 - July 2017 : Internship at ICube (UMR 7357), team Réseaux.
  LoRa End-Device objects development.
• Nov 2015 - Oct 2017 : Undergraduate Teaching Assistant (Université de Strasbourg). Examination and lab supervisor.

Teaching and student supervision

Course	Subjects	Diploma	Year
Real Time Programming	Low level programming in C for real time systems	Engineering Degree in computer & network	2025 - now
System Programming	Low level programming in C and unix primitives	Engineering Degree in computer & network	2024 - now

• Study and research work supervision (Master in Computer Science)
  • Component-trees for self-supervised learning (2025)
  • Interactive segmentation of biomedical images using deep learning (segment anything) (2023)
  • Max-tree for self-supervised learning (2023)
  • Deep learning and morphological operators (Choaib Rostaqi 2021)
• 150h project supervision (Master in Computer Science)
  • Data augmentation for biomedical image segmentation using deep learning (2022)
  • Interactive image segmentation algorithms by graph cutting in Python (2022)
  • Hybrid CNN / component-tree method for object detection (2022)

Old courses

Course	Subjects	Diploma	Year
Database (D11)	Relational Algebra / SQL / Oracle DBMS	BUT in Computer Science	2019 - 2024
Object-oriented Development (P21)	UML & Java & Object-Oriented Programming	BUT in Computer Science	2022 - 2024
Efficient Development (P31)	Advanced Java & Object-Oriented Programming	BUT in Computer Science	2022 - 2024
Discrete mathematics (M11)	Discrete mathematics and C programming	BUT in Computer Science	2023 - 2024
Numerical Methods (M21)	Numerical methods for computer science	BUT in Computer Science	2022 - 2024
Descriptive Statistics (M22)	Numerical tools for descriptive statistics	BUT in Computer Science	2022 - 2024
WEB (W11)	HTML / CSS / JS	BUT in Computer Science	2019 - 2023

Education

• 2019 - 2023 : PhD in Computer Science (ED 269, Université de Strasbourg)
• 2017 - 2019 : Master’s Degree in Computer Science and Imaging Science (UFR de mathématique et d’informatique, Université de Strasbourg)
• 2013 - 2017 : Bachelor’s Degree in Computer Science (UFR de mathématique et d’informatique, Université de Strasbourg)
• 2015 - 2016 : University Diploma of Student Engagement (Université de Strasbourg)
• 2010 - 2013 : High School Diploma in Sciences (Lycée Louis Armand Mulhouse)

Volunteering and Student Engagement

• 2017 - 2019 : Student Vice-President (UFR de mathématique et d’informatique, Université de Strasbourg)
• 2015 - 2017 : Student Rep (UFR de mathématique et d’informatique, Université de Strasbourg)

Associations

• 2019 - 2022 : IMAGeS team representative at AJCI
• 2018 - 2019 : Mission Leader Illkirch at AIUS
• 2017 - 2018 : Vice President Illkirch at AIUS
• 2016 - 2017 : IT manager at ADEM
• 2015 - 2016 : President at ADEM
• 2014 - 2015 : Treasurer at ADEM
• 2013 - 2014 : Mission Leader at ADEM

AIUS : Amicale des Informaticiens de l’Université de Strasbourg (Computer Science Student Association)
ADEM : Amicale Des Étudiants en Mathématiques (Mathematics Student Association)
AJCI : Association des Jeunes Chercheurs d’ICube (Young Lab Researchers)

Contact information

E-mail : contact [at] cyrilmeyer [dot] eu
LinkedIn : cyril-meyer